Repositorium

What is a repositorium?

The repositorium is a searchable database that provides data on relevant articles from journals, company web pages and web pages of governmental agencies about studies/applications of genome-editing in model plants and agricultural crops in the period January 1996 to May 2018. Search options are article type, technique, plant, traits or free text. The repositorium is based on the systematic map of Dominik Modrzejewski et al., published in the journal environmental evidence. (Download article PDF).
  • Book
  • Contribution in…
  • Journal Article
  • Thesis
  • Zeitschriftenaufsatz
  • Base-editing
  • CRISPR/Cas9
  • CRISPR/Cpf1
  • Meganucleases
  • Oligonucleotide-directed mutagenesis
  • TALENs
  • Zinc-finger nucleases
  • Actinidia lindl.
  • Arabidopsis thaliana
  • Arachis hypogaea
  • Bambus oldhamii
  • Banana cv. Rasthali
  • Brachypodium
  • Brassica carinata
  • Brassica napus
  • Brassica oleracea
  • Brassica oleracea L. var. Capitata
  • Camelina sativa
  • Carrizo citrange
  • Chlamydomonas reinhardtii
  • Citrullus lanatus (Thunb.) Matsum & Naka,
  • Citrus paradisi
  • Citrus sinensis
  • Closterium peracerosum-strigosum-littorale complex
  • Coprinopsis cinerea
  • Cucumis sativus
  • Daucus carota
  • Ficus carica
  • Flammulina velutipes
  • Fragaria vesca
  • Glycine Max
  • Gossypium barbadense
  • Gossypium hirsutum
  • Hordeum vulgare
  • Lactuca sativa
  • Linum usitatissimum
  • Lotus japonicus
  • Malus
  • Manihot esculenta
  • Marchantia polymorpha
  • Medicago sativa
  • Medicago truncatula
  • Nannochloropsis gaditana
  • Nannochloropsis oceanica
  • Nicotiana alata
  • Nicotiana attenuata
  • Nicotiana benthamiana
  • Nicotiana tabacum
  • Oryza sativa
  • Panicum virgatum
  • Papaver somniferum
  • Parasponia andersonii
  • Phaeodactylum tricornutum
  • Physcomitrella patens
  • Populus tomentosa Carr.
  • Populus trichocarpa
  • Pseudococcomyxa ellipsoidea
  • Saccharum spp.hybrids
  • Salvia miltiorrhiza
  • Scopelophila cataractae
  • Setaria italica
  • Solanum lycopersicum
  • Solanum pimpinellifolium
  • Solanum tuberosum
  • Sorghum bicolor
  • Taraxacum kok-saghyz
  • Theobroma cacao
  • Tobacco
  • Triticum aestivum
  • Triticum durum
  • Triticum turgidum L. var. Durum
  • Vitis vinifera
  • Zea mays
  • Abiotic stress tolerance
  • Agronomic value
  • Agronomic value, biotic stress tolerance
  • Agronomic value, product quality
  • Basic research
  • Biotic stress tolerance
  • Biotic stress tolerance, agronomic value
  • Herbicide tolerance
  • Industrial
  • Product quality
  • Product quality, Agronomic value
  • Product quality, herbicide tolerance
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524 Einträge gefunden

ID Reference Title Year plant_species genome_editing_technique
151 Journal Article TRANSCRIPTION ACTIVATOR-LIKE EFFECTOR NUCLEASE-Mediated Generation and Metabolic Analysis of Camalexin-Deficient cyp71a12 cyp71a13 Double Knockout Lines
Müller, Teresa M.; Böttcher, Christoph; Morbitzer, Robert; Götz, ... 		2015 Arabidopsis thaliana TALENs Details
152 Journal Article Gene stacking in plant cell using recombinases for gene integration and nucleases for marker gene deletion
Nandy, Soumen; Zhao, Shan; Pathak, Bhuvan P.; Manoharan, Muthusamy; ... 		2015 Oryza sativa Meganucleases, Zinc-finger nucleases Details
153 Journal Article Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
Nekrasov, Vladimir; Staskawicz, Brian; Weigel, Detlef; Jones, Jonathan ... 		2013 Nicotiana benthamiana CRISPR/Cas9 Details
154 Journal Article Targeted gene mutation in tetraploid potato through transient TALEN expression in protoplasts
Nicolia, Alessandro; Proux-Wéra, Estelle; Åhman, Inger; Onkokesung, ... 		2015 Solanum tuberosum TALENs Details
155 Journal Article Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14
Ning, Yong-Qiang; Ma, Ze-Yang; Huang, Huan-Wei; Mo, Huixian; Zhao, ... 		2015 Arabidopsis thaliana CRISPR/Cas9 Details
156 Journal Article Efficient Genome Editing in Apple Using a CRISPR/Cas9 system
Nishitani, Chikako; Hirai, Narumi; Komori, Sadao; Wada, Masato; Okada, ... 		2016 Malus CRISPR/Cas9 Details
157 Journal Article A Defect in DNA Ligase4 Enhances the Frequency of TALEN-Mediated Targeted Mutagenesis in Rice
Nishizawa-Yokoi, Ayako; Cermak, Tomas; Hoshino, Tomoki; Sugimoto, ... 		2016 Oryza sativa TALENs Details
158 Journal Article Efficient and Heritable Targeted Mutagenesis in Mosses Using the CRISPR/Cas9 System
Nomura, Toshihisa; Sakurai, Tetsuya; Osakabe, Yuriko; Osakabe, Keishi; ... 		2016 Physcomitrella patens, Scopelophila cataractae CRISPR/Cas9 Details
159 Journal Article A CRISPR/Cas9 system adapted for gene editing in marine algae
Nymark, Marianne; Sharma, Amit Kumar; Sparstad, Torfinn; Bones, Atle ... 		2016 Phaeodactylum tricornutum CRISPR/Cas9 Details
160 Journal Article Chimeric RNA/DNA oligonucleotide-directed gene targeting in rice
Okuzaki, A.; Toriyama, K. 		2004 Oryza sativa Oligonucleotide-directed mutagenesis Details
161 Journal Article Generation of chromosomal deletions in dicotyledonous plants employing a user-friendly genome editing toolkit
Ordon, Jana; Gantner, Johannes; Kemna, Jan; Schwalgun, Lennart; ... 		2017 Arabidopsis thaliana, Nicotiana benthamiana CRISPR/Cas9 Details
162 Journal Article Optimization of CRISPR/Cas9 genome editing to modify abiotic stress responses in plants
Osakabe, Yuriko; Watanabe, Takahito; Sugano, Shigeo S.; Ueta, Risa; ... 		2016 Arabidopsis thaliana CRISPR/Cas9 Details
163 Journal Article CRISPR/Cas9-mediated efficient and heritable targeted mutagenesis in tomato plants in the first and later generations
Pan, Changtian; Ye, Lei; Qin, Li; Liu, Xue; He, Yanjun; Wang, Jie; ... 		2016 Solanum lycopersicum CRISPR/Cas9 Details
164 Journal Article ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation
Pater, Sylvia de; Neuteboom, Leon W.; Pinas, Johan E.; Hooykaas, Paul ... 		2009 Arabidopsis thaliana Zinc-finger nucleases Details
165 Journal Article ZFN-mediated gene targeting of the Arabidopsis protoporphyrinogen oxidase gene through Agrobacterium-mediated floral dip transformation
Pater, Sylvia de; Pinas, Johan E.; Hooykaas, Paul J. J.; van der Zaal, ... 		2013 Arabidopsis thaliana Zinc-finger nucleases Details
166 Journal Article Targeted mutagenesis using zinc-finger nucleases in perennial fruit trees
Peer, Reut; Rivlin, Gil; Golobovitch, Sara; Lapidot, Moshe; Gal-On, ... 		2015 Malus, Ficus carica Zinc-finger nucleases Details
167 Journal Article A tool for functional plant genomics: Chimeric RNA/DNA oligonucleotides cause in vivo gene-specific mutations
PETER R. BEETHAM,PETER B. KIPP,XENIA L. SAWYCKY,CHARLES J. ARNTZEN, ... 		1999 Nicotiana tabacum Oligonucleotide-directed mutagenesis Details
168 Journal Article Genome-Wide Assessment of Efficiency and Specificity in CRISPR/Cas9 Mediated Multiple Site Targeting in Arabidopsis
Peterson, Brenda A.; Haak, David C.; Nishimura, Marc T.; Teixeira, ... 		2016 Arabidopsis thaliana CRISPR/Cas9 Details
169 Journal Article Zinc finger nuclease-mediated transgene deletion
Petolino, Joseph F.; Worden, Andrew; Curlee, Krisi; Connell, James; ... 		2010 Tobacco Zinc-finger nucleases Details
170 Journal Article Engineering of CRISPR/Cas9-mediated potyvirus resistance in transgene-free Arabidopsis plants
Pyott, Douglas E.; Sheehan, Emma; Molnar, Attila 		2016 Arabidopsis thaliana CRISPR/Cas9 Details
171 Journal Article High-efficiency CRISPR/Cas9 multiplex gene editing using the glycine tRNA-processing system-based strategy in maize
Qi, Weiwei; Zhu, Tong; Tian, Zhongrui; Li, Chaobin; Zhang, Wei; Song, ... 		2016 Zea mays CRISPR/Cas9 Details
172 Journal Article Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases
Qi, Yiping; Li, Xiaohong; Zhang, Yong; Starker, Colby G.; Baltes, ... 		2014 Arabidopsis thaliana Zinc-finger nucleases Details
173 Journal Article Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants
Qi, Yiping; Zhang, Yong; Baller, Joshua A.; Voytas, Daniel F. 		2016 Arabidopsis thaliana Zinc-finger nucleases Details
174 Journal Article Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
Qi, Yiping; Zhang, Yong; Zhang, Feng; Baller, Joshua A.; Cleland, ... 		2013 Arabidopsis thaliana Zinc-finger nucleases Details
175 Journal Article Novel rice mutants overexpressing the brassinosteroid catabolic gene CYP734A4
Qian, Wenjing; Wu, Chao; Fu, Yaping; Hu, Guocheng; He, Zhengquan; Liu, ... 		2017 Oryza sativa CRISPR/Cas9 Details
176 Journal Article A CRISPR/Cas9 toolkit for efficient targeted base editing to induce genetic variations in rice
Ren, Bin; Yan, Fang; Kuang, Yongjie; Li, Na; Zhang, Dawei; Lin, ... 		2017 Oryza sativa Base-editing Details
177 Journal Article CRISPR/Cas9-mediated efficient targeted mutagenesis in Chardonnay (Vitis vinifera L.)
Ren, Chong; Liu, Xianju; Zhang, Zhan; Wang, Yi; Duan, Wei; Li, ... 		2016 Vitis vinifera CRISPR/Cas9 Details
178 Journal Article Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model
Ron, Mily; Kajala, Kaisa; Pauluzzi, Germain; Wang, Dongxue; Reynoso, ... 		2014 Solanum lycopersicum CRISPR/Cas9 Details
179 Journal Article Spontaneous mutation frequency in plants obscures the effect of chimeraplasty
Ruiter, René; van den Brande, Ilse; Stals, Ellen; Delauré, Stijn; ... 		2003 Brassica napus, Nicotiana tabacum Oligonucleotide-directed mutagenesis Details
180 Journal Article Generation of stable nulliplex autopolyploid lines of Arabidopsis thaliana using CRISPR/Cas9 genome editing
Ryder, Peter; McHale, Marcus; Fort, Antoine; Spillane, Charles 		2017 Arabidopsis thaliana CRISPR/Cas9 Details
181 Journal Article Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA)
Sander, Jeffry D.; Dahlborg, Elizabeth J.; Goodwin, Mathew J.; Cade, ... 		2013 Arabidopsis thaliana, Glycine Max Zinc-finger nucleases Details
182 Journal Article Oligonucleotide-Mediated Genome Editing Provides Precision and Function to Engineered Nucleases and Antibiotics in Plants
Sauer, Noel J.; Narváez-Vásquez, Javier; Mozoruk, Jerry; Miller, Ryan ... 		2017 Arabidopsis thaliana, Linum usitatissimum Oligonucleotide-directed mutagenesis, TALENs, CRISPR/Cas9 Details
183 Journal Article RNA-Guided Cas9-Induced Mutagenesis in Tobacco Followed by Efficient Genetic Fixation in Doubled Haploid Plants
Schedel, Sindy; Pencs, Stefanie; Hensel, Götz; Müller, Andrea; Rutten, ... 		2016 Nicotiana tabacum CRISPR/Cas9 Details
184 Journal Article Repair of adjacent single-strand breaks is often accompanied by the formation of tandem sequence duplications in plant genomes
Schiml, Simon; Fauser, Friedrich; Puchta, Holger 		2016 Arabidopsis thaliana CRISPR/Cas9 Details
185 Journal Article The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny
Schiml, Simon; Fauser, Friedrich; Puchta, Holger 		2014 Arabidopsis thaliana CRISPR/Cas9 Details
186 Journal Article Targeted gene exchange in plant cells mediated by a zinc finger nuclease double cut
Schneider, Katja; Schiermeyer, Andreas; Dolls, Anja; Koch, Natalie; ... 		2016 Nicotiana tabacum Zinc-finger nucleases Details
187 Journal Article Rapid and efficient gene modification in rice and Brachypodium using TALENs
Shan, Qiwei; Wang, Yanpeng; Chen, Kunling; Liang, Zhen; Li, Jun; ... 		2013 Brachypodium, Oryza sativa TALENs Details
188 Journal Article Genome editing in rice and wheat using the CRISPR/Cas system
Shan, Qiwei; Wang, Yanpeng; Li, Jun; Gao, Caixia 		2014 Oryza sativa, Triticum aestivum CRISPR/Cas9 Details
189 Journal Article Targeted genome modification of crop plants using a CRISPR-Cas system
Shan, Qiwei; Wang, Yanpeng; Li, Jun; Zhang, Yi; Chen, Kunling; Liang, ... 		2013 Oryza sativa, Triticum aestivum CRISPR/Cas9, TALENs Details
190 Journal Article Creation of fragrant rice by targeted knockout of the OsBADH2 gene using TALEN technology
Shan, Qiwei; Zhang, Yi; Chen, Kunling; Zhang, Kang; Gao, Caixia 		2015 Oryza sativa TALENs Details
191 Journal Article CRISPR/Cas9-Induced Double-Strand Break Repair in Arabidopsis Nonhomologous End-Joining Mutants
Shen, Hexi; Strunks, Gary D.; Klemann, Bart J. P. M.; Hooykaas, Paul ... 		2017 Arabidopsis thaliana CRISPR/Cas9 Details
192 Journal Article QTL editing confers opposing yield performance in different rice varieties
Shen, Lan; Wang, Chun; Fu, Yaping; Wang, Junjie; Liu, Qing; Zhang, ... 		2016 Oryza sativa CRISPR/Cas9 Details
193 Journal Article ARGOS8 variants generated by CRISPR-Cas9 improve maize grain yield under field drought stress conditions
Shi, Jinrui; Gao, Huirong; Wang, Hongyu; Lafitte, H. Renee; Archibald, ... 		2017 Zea mays CRISPR/Cas9 Details
194 Journal Article CRISPR/Cas9-induced knockout and knock-in mutations in Chlamydomonas reinhardtii
Shin, Sung-Eun; Lim, Jong-Min; Koh, Hyun Gi; Kim, Eun Kyung; Kang, Nam ... 		2016 Chlamydomonas reinhardtii CRISPR/Cas9 Details
195 Journal Article Precise genome modification in the crop species Zea mays using zinc-finger nucleases
Shukla, Vipula K.; Doyon, Yannick; Miller, Jeffrey C.; DeKelver, ... 		2009 Zea mays Zinc-finger nucleases Details
196 Journal Article Nuclear gene targeting in Chlamydomonas using engineered zinc-finger nucleases
Sizova, Irina; Greiner, Andre; Awasthi, Mayanka; Kateriya, Suneel; ... 		2013 Chlamydomonas reinhardtii Zinc-finger nucleases Details
197 Journal Article Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato
Soyk, Sebastian; Müller, Niels A.; Park, Soon Ju; Schmalenbach, Inga; ... 		2017 Solanum lycopersicum CRISPR/Cas9 Details
198 Journal Article Dual-targeting by CRISPR/Cas9 for precise excision of transgenes from rice genome
Srivastava, Vibha; Underwood, Jamie L.; Zhao, Shan 		2017 Oryza sativa CRISPR/Cas9 Details
199 Journal Article Highly efficient heritable plant genome engineering using Cas9 orthologues from Streptococcus thermophilus and Staphylococcus aureus
Steinert, Jeannette; Schiml, Simon; Fauser, Friedrich; Puchta, Holger 		2015 Arabidopsis thaliana CRISPR/Cas9 Details
200 Journal Article Targeted Mutagenesis in Plant Cells through Transformation of Sequence-Specific Nuclease mRNA
Stoddard, Thomas J.; Clasen, Benjamin M.; Baltes, Nicholas J.; ... 		2016 Nicotiana benthamiana TALENs Details